（1）国家自然科学基金青年科学基金项目（C类）[原青年科学基金项目], 82301889, 线粒体内膜蛋白PHB2介导的线粒体自噬在胚胎着床中的作用及机制研究, 2024/01-至 2026/12, 30万元, 在研, 主持

（2）科技部国家重点研发计划项目, 2023YFC2705600, 多种类型遗传疾病的无创产前同步式筛查新技术与临床研究, 2023/12 至 2026/12, 60万元, 在研, 骨干

（3）中国科学技术协会青年人才托举工程, 2023QNRC001, 生殖医学与遗传诊断, 2023/09 至 2025/12, 30万元, 在研, 主持

（4）北京市自然科学基金面上项目, 7232203, CD164 调控趋化因子通路影响精子发生的作用机制研究, 2023/01 至 2025/12, 20万元, 在研, 主持

（5）科技部国家重点研发计划项目, 2021YFC2700200, 生精微环境调控精子发生的机制, 2021/12 至2024/12, 207.4万元, 结题, 骨干

陈依东; 周沛劼; 乔杰; 张振毅 ; 一种基于机器学习的母源污染去除方法及相关设备, 2024-11-28,中国, ZL202411721002.X

闫丽盈; 陈依东; 严智强; 顾庭菲; 乔杰; 赵扬玉; 魏瑗; 朱小辉; 蒋思博; 阔瀛; 关硕 ; 一种产前诊断中母源污染的鉴别方法, 2023-06-30, 中国, ZL202310786371.6

（1）Wang M#, Liu X#, Chang G#, Chen Y#, An G#, Yan L, Gao S, Xu Y, Cui Y, Dong J, Chen Y, Fan X, Hu Y, Song K, Zhu X, Gao Y, Yao Z, Bian S, Hou Y, Lu J, Wang R, Fan Y, Lian Y, Tang W, Wang Y, Liu J, Zhao L, Wang L, Liu Z, Yuan R, Shi Y, Hu B, Ren X, Tang F*, Zhao XY*, Qiao J*. Single-Cell RNA Sequencing Analysis Reveals Sequential Cell Fate Transition during Human Spermatogenesis. Cell Stem Cell. 2018 Oct 4;23(4):599-614.e4.

（2）Liu X#, Chen Y#, Tang W, Zhang L, Chen W, Yan Z, Yuan P, Yang M, Kong S, Yan L*, Qiao J*. Single-cell transcriptome analysis of the novel coronavirus (SARS-CoV-2) associated gene ACE2 expression in normal and non-obstructive azoospermia (NOA) human maletestes. Sci China Life Sci. 2020 Jul;63(7):1006-1015.

（3）Chen Y#, Liu X#, Zhang L#, Zhu F#, Yan L, Tang W, Zhang Z, Liu Q*, Jiang H*, Qiao J*. Deciphering the Molecular Characteristics of Human Idiopathic Nonobstructive Azoospermia from the Perspective of Germ Cells. Adv Sci (Weinh). 2023 Jun;10(17):e2206852.

（4）Chen Y#, Gao Y#, Jia J, Chang L, Liu P, Qiao J*, Tang F*, Wen L*, Huang J*. DNA methylome reveals cellular origin of cell-free DNA in spent medium of human preimplantation embryos. J Clin Invest. 2021 Jun 15;131(12):e146051.

（5）Liu D#, Chen Y#, Ren Y#, Yuan P, Wang N, Liu Q, Yang C, Yan Z, Yang M, Wang J, Lian Y, Yan J, Zhai F, Nie Y, Zhu X, Chen Y, Li R, Chang HM, Leung PCK, Qiao J*, Yan L*. Primary specification of blastocyst trophectoderm by scRNA-seq: New insights into embryo implantation. Sci Adv. 2022 Aug 12;8(32):eabj3725.

（6）Wang P#, Chen Y#, Yong J, Cui Y, Wang R, Wen L, Qiao J*, Tang F*. Dissecting the Global Dynamic Molecular Profiles of Human Fetal Kidney Development by SingleCell RNA Sequencing. Cell Rep. 2018 Sep 25;24(13):3554-3567.e3.

（7）Hu Y#, Wang X#, Hu B#, Mao Y#, Chen Y#, Yan L, Yong J, Dong J, Wei Y, Wang W, Wen L, Qiao J*, Tang F*. Dissecting the transcriptome landscape of the human fetal neural retina and retinal pigment epithelium by single-cell RNA-seq analysis. PLoS Biol. 2019 Jul 3;17(7):e3000365.

（8）Dong J#, Zhou P#, Wu Y#, Chen Y#, Xie H, Gao Y, Lu J, Yang J, Zhang X, Wen L, Li T*, Tang F*. Integrating single-cell datasets with ambiguous batch information by incorporating molecular network features. Brief Bioinform. 2022 Jan 17;23(1):bbab366.

（9）Gao Y#*, Chen Y#*, Qiao J, Huang J*, Wen L*. DNA methylation protocol for analyzing cell-free DNA in the spent culture medium of human preimplantation embryos. STAR Protoc. 2023 Apr 21;4(2):102247.

（10）Chen Y, Chen W, Wang Y, Wei Y, Huang J*. Integrated multiomics reveal the molecular characteristics of conjoined twin fetuses. Reprod Biomed Online. 2023 Jul;47(1):26-34.

（11） Chen Y*, Huang J, Tang F, Wen L*, Qiao J*. A computational DNA methylation method to remove contaminated DNA from spent embryo culture medium for noninvasive preimplantation genetic testing. EBioMedicine. 2025 Apr;114:105669.